Search results for " Deep Learning"
showing 10 items of 30 documents
Leveraging Uncertainty Estimates to Improve Segmentation Performance in Cardiac MR
2021
International audience; In medical image segmentation, several studies have used Bayesian neural networks to segment and quantify the uncertainty of the images. These studies show that there might be an increased epistemic uncertainty in areas where there are semantically and visually challenging pixels. The uncertain areas of the image can be of a great interest as they can possibly indicate the regions of incorrect segmentation. To leverage the uncertainty information, we propose a segmentation model that incorporates the uncertainty into its learning process. Firstly, we generate the uncertainty estimate (sample variance) using Monte-Carlo dropout during training. Then we incorporate it …
A maChine and deep Learning Approach to predict pulmoNary hyperteNsIon in newbornS with congenital diaphragmatic Hernia (CLANNISH): Protocol for a re…
2021
Introduction Outcome predictions of patients with congenital diaphragmatic hernia (CDH) still have some limitations in the prenatal estimate of postnatal pulmonary hypertension (PH). We propose applying Machine Learning (ML), and Deep Learning (DL) approaches to fetuses and newborns with CDH to develop forecasting models in prenatal epoch, based on the integrated analysis of clinical data, to provide neonatal PH as the first outcome and, possibly: favorable response to fetal endoscopic tracheal occlusion (FETO), need for Extracorporeal Membrane Oxygenation (ECMO), survival to ECMO, and death. Moreover, we plan to produce a (semi)automatic fetus lung segmentation system in Magnetic Resonanc…
Automatic Quality Assessment of Cardiac MR Images with Motion Artefacts using Multi-task Learning and K-Space Motion Artefact Augmentation
2022
The movement of patients and respiratory motion during MRI acquisition produce image artefacts that reduce the image quality and its diagnostic value. Quality assessment of the images is essential to minimize segmentation errors and avoid wrong clinical decisions in the downstream tasks. In this paper, we propose automatic multi-task learning (MTL) based classification model to detect cardiac MR images with different levels of motion artefact. We also develop an automatic segmentation model that leverages k-space based motion artefact augmentation (MAA) and a novel compound loss that utilizes Dice loss with a polynomial version of cross-entropy loss (PolyLoss) to robustly segment cardiac st…
Edge Computing-enabled Intrusion Detection for C-V2X Networks using Federated Learning
2022
Intrusion detection systems (IDS) have already demonstrated their effectiveness in detecting various attacks in cellular vehicle-to-everything (C-V2X) networks, especially when using machine learning (ML) techniques. However, it has been shown that generating ML-based models in a centralized way consumes a massive quantity of network resources, such as CPU/memory and bandwidth, which may represent a critical issue in such networks. To avoid this problem, the new concept of Federated Learning (FL) emerged to build ML-based models in a distributed and collaborative way. In such an approach, the set of nodes, e.g., vehicles or gNodeB, collaborate to create a global ML model trained across thes…
Deep learning for knowledge tracing in learning analytics: An overview
2021
Learning Analytics (LA) is a recent research branch that refers to methods for measuring, collecting, analyzing, and reporting learners’ data, in order to better understand and optimize the processes and the environments. Knowledge Tracing (KT) deals with the modeling of the evolution, during the time, of the students’ learning process. Particularly its aim is to predict students’ outcomes in order to avoid failures and to support both students and teachers. Recently, KT has been tackled by exploiting Deep Learning (DL) models and generating a new, ongoing, research line that is known as Deep Knowledge Tracing (DKT). This was made possible by the digitalization process that has simplified t…
Automatic Segmentation Using a Hybrid Dense Network Integrated With an 3D-Atrous Spatial Pyramid Pooling Module for Computed Tomography (CT) Imaging
2020
Computed tomography (CT) with a contrast-enhanced imaging technique is extensively proposed for the assessment and segmentation of multiple organs, especially organs at risk. It is an important factor involved in the decision making in clinical applications. Automatic segmentation and extraction of abdominal organs, such as thoracic organs at risk, from CT images are challenging tasks due to the low contrast of pixel values surrounding other organs. Various deep learning models based on 2D and 3D convolutional neural networks have been proposed for the segmentation of medical images because of their automatic feature extraction capability based on large labeled datasets. In this paper, we p…
Deep learning architectures for prediction of nucleosome positioning from sequences data
2018
Abstract Background Nucleosomes are DNA-histone complex, each wrapping about 150 pairs of double-stranded DNA. Their function is fundamental for one of the primary functions of Chromatin i.e. packing the DNA into the nucleus of the Eukaryote cells. Several biological studies have shown that the nucleosome positioning influences the regulation of cell type-specific gene activities. Moreover, computational studies have shown evidence of sequence specificity concerning the DNA fragment wrapped into nucleosomes, clearly underlined by the organization of particular DNA substrings. As the main consequence, the identification of nucleosomes on a genomic scale has been successfully performed by com…
Fake News Spreaders Detection: Sometimes Attention Is Not All You Need
2022
Guided by a corpus linguistics approach, in this article we present a comparative evaluation of State-of-the-Art (SotA) models, with a special focus on Transformers, to address the task of Fake News Spreaders (i.e., users that share Fake News) detection. First, we explore the reference multilingual dataset for the considered task, exploiting corpus linguistics techniques, such as chi-square test, keywords and Word Sketch. Second, we perform experiments on several models for Natural Language Processing. Third, we perform a comparative evaluation using the most recent Transformer-based models (RoBERTa, DistilBERT, BERT, XLNet, ELECTRA, Longformer) and other deep and non-deep SotA models (CNN,…
McRock at SemEval-2022 Task 4: Patronizing and Condescending Language Detection using Multi-Channel CNN, Hybrid LSTM, DistilBERT and XLNet
2022
In this paper we propose four deep learning models for the task of detecting and classifying Patronizing and Condescending Language (PCL) using a corpus of over 13,000 annotated paragraphs in English. The task, hosted at SemEval-2022, consists of two different subtasks. The Subtask 1 is a binary classification problem. Namely, given a paragraph, a system must predict whether or not it contains any form of PCL. The Subtask 2 is a multi-label classification task. Given a paragraph, a system must identify which PCL categories express the condescension. A paragraph might contain one or more categories of PCL. To face with the first subtask we propose a multi-channel Convolutional Neural Network…
Using Polynomial Loss and Uncertainty Information for Robust Left Atrial and Scar Quantification and Segmentation
2022
Automatic and accurate segmentation of the left atrial (LA) cavity and scar can be helpful for the diagnosis and prognosis of patients with atrial fibrillation. However, automating the segmentation can be difficult due to the poor image quality, variable LA shapes, and small discrete regions of LA scars. In this paper, we proposed a fully-automatic method to segment LA cavity and scar from Late Gadolinium Enhancement (LGE) MRIs. For the loss functions, we propose two different losses for each task. To enhance the segmentation of LA cavity from the multicenter dataset, we present a hybrid loss that leverages Dice loss with a polynomial version of cross-entropy loss (PolyCE). We also utilize …